for command example

for model in remit_lme remit_lme2 response_lme response_lme2; do

$code/fsl_sub_hpc_12 palm -i all_FA_skeletonised.nii -o ${model}_palm_accel -m mean_FA_skeleton_mask.nii -d /ifs/scratch/pimri/posnerlab/1anal/Hellerstein/analysis/tbss/du/design/${model}.mat -t /ifs/scratch/pimri/posnerlab/1anal/Hellerstein/analysis/tbss/du/design/${model}.con -n 500 -accel tail -eb /ifs/scratch/pimri/posnerlab/1anal/Hellerstein/analysis/tbss/du/design/${model}.grp -within -whole -T -tfce2D

done