Brain imaging & Unix command/command

find_the_biggest

Re-Happy-Doc 2016. 12. 13. 17:53

/usr/local/fsl/bin/probtrackx2 -x /Users/rehappydoc/Documents/Tracula/Yang_DuSung/mri/roi/10.nii.gz -l --onewaycondition --omatrix1 -c 0.2 -S 2000 --steplength=0.5 -P 100 --fibthresh=0.01 --distthresh=0.0 --sampvox=0.0 --xfm=/Users/rehappydoc/Documents/Tracula/Yang_DuSung/dmri/xfms/mni2diff.bbr.mat --avoid=/Users/rehappydoc/Documents/Tracula/Yang_DuSung/mri/roi/exclusionmask2.nii.gz --forcedir --opd -s /Users/rehappydoc/Documents/Tracula/Yang_DuSung/dmri.bedpostX/merged -m /Users/rehappydoc/Documents/Tracula/Yang_DuSung/dmri.bedpostX/nodif_brain_mask --dir=/Users/rehappydoc/Documents/Tracula/Yang_DuSung/thalamus_5 --targetmasks=/Users/rehappydoc/Documents/Tracula/Yang_DuSung/thalamus_5/targets.txt --os2t 


http://dbic.dartmouth.edu/wiki/index.php/Diffusion_Tensor_Imaging_Analysis