bash-3.2$ /usr/local/fsl/bin/probtrackx2 -x /Users/PosnerLab/Documents/Yang_DuSung/mri/roi/49_dil.nii.gz -l --onewaycondition -c 0.2 -S 2000 --steplength=0.5 -P 100 --fibthresh=0.01 --distthresh=0.0 --sampvox=0.0 --xfm=/Users/PosnerLab/Documents/Yang_DuSung/dmri/xfms/mni2diff.bbr.mat --avoid=/Users/PosnerLab/Documents/Yang_DuSung/mri/roi/exclusionmask2.nii.gz --forcedir --opd -s /Users/PosnerLab/Documents/Yang_DuSung/dmri.bedpostX/merged -m /Users/PosnerLab/Documents/Yang_DuSung/dmri.bedpostX/nodif_brain_mask --dir=/Users/PosnerLab/Documents/Yang_DuSung/thalamus
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Log directory is: /Users/PosnerLab/Documents/Yang_DuSung/thalamus
Running in seedmask mode
load seeds
done.
Load bedpostx samples
1_1
1_2
1_3
2_1
2_2
2_3
nfibres : 2
nsamples : 50
Done loading samples.
Volume seeds
volume 1
time spent tracking: 456 seconds
save results
finished
bash-3.2$
'Brain imaging & Unix command > command' 카테고리의 다른 글
| MRIcron으로 한 brain ROI 및 thalamus 그림 (0) | 2016.11.19 |
|---|---|
| Freesurfer_LUT_Hompage (ROI) number (0) | 2016.11.19 |
| fslmaths (0) | 2016.10.20 |
| freeview and mathced ROI (0) | 2016.10.14 |
| Smoothing (0) | 2016.10.13 |