http://community.mrtrix.org/t/tracts-group-mask/297
tckmap yourtracks.tck -template fa.mif - | mrthreshold - -abs 5 - | mrstats fa.mif -mask -
http://community.mrtrix.org/t/extract-mean-diffusivity/187
# NBS 만들기
1.mr_parcels.nii. file을 MNI space에 corregiratration
fsl_reg /Users/rehappydoc/Documents/NBS1.2/AAL/mr_parcels.nii $FSLDIR/data/standard/MNI152_T1_1mm.nii.gz /Users/rehappydoc/Documents/NBS1.2/AAL/mr_parcels_mni -a
2. T1. mgz file을 T1.nii.gz file 로 전환
mrconvert /Volumes/SAMSUNG/MRI_back_up/MRI/10800309/recon_all/mri/T1.mgz T1.nii.gz
3.flip4fsl T1.nii.gz T1_flip
4. fsl_reg /Volumes/SAMSUNG/MRI_back_up/MRI/10800309/b0.nii.gz $FSLDIR/data/standard/MNI152_T1_1mm.nii.gz diff2mni -a
5. flip4fsl /Volumes/SAMSUNG/MRI_back_up/MRI/10800309/b0.nii.gz b0_flip
# fslswapdim /Volumes/SAMSUNG/MRI_back_up/MRI/10800309/b0.nii.gz x -y z b0_flip
# fslorient -forceradiological b0_flip
6. flirt -in /Volumes/SAMSUNG/MRI_back_up/MRI/10800309/mr_parcels.nii.gz -ref /Users/rehappydoc/Documents/NBS1.2/AAL/diff2mni.nii.gz -out mr_parcels_mni.nii -applyxfm -init /Users/rehappydoc/Documents/NBS1.2/AAL/diff2mni.mat -interp nearestneighbour
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